• Sample set summary
  • Classification results
  • Sankey visualization
    • all.filtered.kraken
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Sample set summary

 
 

Classification results

Showing 100 of 1993 species.
 
Showing 100 of 1866 species.
 
Showing 100 of 439 species.
 
Showing 100 of 1212 species.
 

Sankey visualization

all.filtered.kraken

Bacteria → Proteobacteria 1.14M cladeReadsEukaryota → Metazoa 918k cladeReadsProteobacteria → Gammaproteobacteria 839k cladeReadsEnterobacteriales → Enterobacteriaceae 821k cladeReadsGammaproteobacteria → Enterobacteriales 821k cladeReadsMetazoa → Arthropoda 513k cladeReadsArthropoda → Insecta 513k cladeReadsInsecta → Hemiptera 457k cladeReadsHemiptera → Aphididae 457k cladeReadsMetazoa → Chordata 397k cladeReadsChordata → Mammalia 390k cladeReadsEnterobacteriaceae → Candidatus Regiella 378k cladeReadsCandidatus Regiella → Candidatus Regiella insecticola 378k cladeReadsAphididae → Acyrthosiphon 354k cladeReadsAcyrthosiphon → Acyrthosiphon pisum 354k cladeReadsEnterobacteriaceae → Buchnera 321k cladeReadsBuchnera → Buchnera aphidicola 321k cladeReadsProteobacteria → Alphaproteobacteria 292k cladeReadsAlphaproteobacteria → Rickettsiales 287k cladeReadsRickettsiales → Rickettsiaceae 277k cladeReadsRickettsiaceae → Rickettsia 277k cladeReadsMammalia → Rodentia 250k cladeReadsRodentia → Muridae 248k cladeReadsMuridae → Mus 246k cladeReadsMus → Mus musculus 244k cladeReadsBacteria → Firmicutes 231k cladeReadsFirmicutes → Bacilli 229k cladeReadsBacilli → Bacillales 224k cladeReadsBacillales → Bacillaceae 203k cladeReadsBacillaceae → Bacillus 180k cladeReadsBacillus → Bacillus sp. FJAT-22090 154k cladeReadsMammalia → Primates 135k cladeReadsPrimates → Hominidae 134k cladeReadsHominidae → Homo 124k cladeReadsHomo → Homo sapiens 124k cladeReadsRickettsia → Rickettsia endosymbiont of Ixodes pacificus 103k cladeReadsAphididae → Diuraphis 102k cladeReadsDiuraphis → Diuraphis noxia 102k cladeReadsRickettsia → spotted fever group 94.9k cladeReadsRickettsia → belli group 74.1k cladeReadsEnterobacteriaceae → Arsenophonus 62.8k cladeReadsInsecta → Hymenoptera 53.1k cladeReadsHymenoptera → Braconidae 43.3k cladeReadsEukaryota → Fungi 35.1k cladeReadsEnterobacteriaceae → Serratia 32.1k cladeReadsTenericutes → Mollicutes 19.1k cladeReadsBacteria → Tenericutes 19.1k cladeReadsBacteria → Actinobacteria 19.0k cladeReadsActinobacteria → Actinobacteria 19.0k cladeReadsFungi → Basidiomycota 18.7k cladeReadsMollicutes → Entomoplasmatales 18.3k cladeReadsEntomoplasmatales → Spiroplasmataceae 18.1k cladeReadsBasidiomycota → Agaricomycetes 17.6k cladeReadsEukaryota → Apicomplexa 16.3k cladeReadsApicomplexa → Aconoidasida 16.0k cladeReadsAconoidasida → Haemosporida 16.0k cladeReadsHaemosporida → Plasmodiidae 16.0k cladeReadsEukaryota → Viridiplantae 14.1k cladeReadsViridiplantae → Streptophyta 13.6k cladeReadsActinobacteria → Corynebacteriales 12.3k cladeReadsCorynebacteriales → Nocardiaceae 11.6k cladeReadsFungi → Ascomycota 9.70k cladeReadsFungi → Entomophthoromycetes 6.26k cladeReadsEntomophthoromycetes 6.26k cladeReadsEntomophthoromycetes6.26kAconoidasida 16.0k cladeReadsAconoidasida16.0kAgaricomycetes 17.6k cladeReadsAgaricomycetes17.6kActinobacteria 19.0k cladeReadsActinobacteria19.0kMollicutes 19.1k cladeReadsMollicutes19.1kBacilli 229k cladeReadsBacilli229kAlphaproteobacteria 292k cladeReadsAlphaproteobacteria292kMammalia 390k cladeReadsMammalia390kInsecta 513k cladeReadsInsecta513kGammaproteobacteria 839k cladeReadsGammaproteobacteria839kArchaea 410 cladeReadsArchaea410Viruses 48.6k cladeReadsViruses48.6kEukaryota 987k cladeReadsEukaryota987kBacteria 1.41M cladeReadsBacteria1.41MNocardiaceae 11.6k cladeReadsNocardiaceae11.6kPlasmodiidae 16.0k cladeReadsPlasmodiidae16.0kSpiroplasmataceae 18.1k cladeReadsSpiroplasmataceae18.1kBraconidae 43.3k cladeReadsBraconidae43.3kHominidae 134k cladeReadsHominidae134kBacillaceae 203k cladeReadsBacillaceae203kMuridae 248k cladeReadsMuridae248kRickettsiaceae 277k cladeReadsRickettsiaceae277kAphididae 457k cladeReadsAphididae457kEnterobacteriaceae 821k cladeReadsEnterobacteriaceae821kSerratia 32.1k cladeReadsSerratia32.1kArsenophonus 62.8k cladeReadsArsenophonus62.8kDiuraphis 102k cladeReadsDiuraphis102kHomo 124k cladeReadsHomo124kBacillus 180k cladeReadsBacillus180kMus 246k cladeReadsMus246kRickettsia 277k cladeReadsRickettsia277kBuchnera 321k cladeReadsBuchnera321kAcyrthosiphon 354k cladeReadsAcyrthosiphon354kCandidatus Regiella 378k cladeReadsCandidatus Regiella378kViridiplantae 14.1k cladeReadsViridiplantae14.1kFungi 35.1k cladeReadsFungi35.1kMetazoa 918k cladeReadsMetazoa918kCorynebacteriales 12.3k cladeReadsCorynebacteriales12.3kHaemosporida 16.0k cladeReadsHaemosporida16.0kEntomoplasmatales 18.3k cladeReadsEntomoplasmatales18.3kHymenoptera 53.1k cladeReadsHymenoptera53.1kPrimates 135k cladeReadsPrimates135kBacillales 224k cladeReadsBacillales224kRodentia 250k cladeReadsRodentia250kRickettsiales 287k cladeReadsRickettsiales287kHemiptera 457k cladeReadsHemiptera457kEnterobacteriales 821k cladeReadsEnterobacteriales821kAscomycota 9.70k cladeReadsAscomycota9.70kStreptophyta 13.6k cladeReadsStreptophyta13.6kApicomplexa 16.3k cladeReadsApicomplexa16.3kBasidiomycota 18.7k cladeReadsBasidiomycota18.7kActinobacteria 19.0k cladeReadsActinobacteria19.0kTenericutes 19.1k cladeReadsTenericutes19.1kFirmicutes 231k cladeReadsFirmicutes231kChordata 397k cladeReadsChordata397kArthropoda 513k cladeReadsArthropoda513kProteobacteria 1.14M cladeReadsProteobacteria1.14Mbelli group 74.1k cladeReadsbelli group74.1kspotted fever group 94.9k cladeReadsspotted fever group94.9kDiuraphis noxia 102k cladeReadsDiuraphis noxia102kRickettsia endosymbiont of Ixodes pacificus 103k cladeReadsRickettsia endosymbiont of Ixodes pacificus103kHomo sapiens 124k cladeReadsHomo sapiens124kBacillus sp. FJAT-22090 154k cladeReadsBacillus sp. FJAT-22090154kMus musculus 244k cladeReadsMus musculus244kBuchnera aphidicola 321k cladeReadsBuchnera aphidicola321kAcyrthosiphon pisum 354k cladeReadsAcyrthosiphon pisum354kCandidatus Regiella insecticola 378k cladeReadsCandidatus Regiella insecticola378kDKPCOFGS

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This file was generated with the Pavian R package version 0.8.1 on Tue May 15 17:21:23 2018. Please cite Pavian if you use it in your research.